refs: store the main ref store inside the repository struct

refs: store the main ref store inside the repository struct

This moves the 'main_ref_store', which was a global variable in refs.c
into the repository struct.

This patch does not deal with the parts in the refs subsystem which deal
with the submodules there. A later patch needs to get rid of the submodule
exposure in the refs API, such as 'get_submodule_ref_store(path)'.

Acked-by: Michael Haggerty <mhagger@alum.mit.edu>
Signed-off-by: Stefan Beller <sbeller@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>